rs31558024 SNP Detail

Summary

• ID
  rs31558024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172462486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG GGTTCTCTGC TTTCTCTGTC
  Y
  ACCTTCCACG TGTCAGGGAA GAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss49751236	NES13026604	PERLEGEN	MM_PANEL2	f	SNP				C		C		T		C
ss120013353	PARCsnp_1.20755	PARC_SEQ	INBRED	f	SNP			T		C
ss120015565	PARCsnp_1.10934	PARC_SEQ	INBRED	f	SNP			T		C
ss146197915	ENSMUSSNP649126	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C
ss320126710	CHEV_1_174565050	CHEVERUD	SCREENING_POP	f	SNP							C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs31558024					SNP	C	C	T	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751236	NES13026604	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172462486 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	1982 bp upstream
Gm35601	predicted gene, 35601	within coordinates
Rr396594	regulatory region 396594	1725 bp downstream
Rr423643	regulatory region 423643	1863 bp distal
Rr423644	regulatory region 423644	1014 bp distal
Rr423645	regulatory region 423645	1093 bp distal
Tssr10245	transcription start site region 10245	1844 bp downstream
Tssr15249	transcription start site region 15249	1976 bp upstream