rs3155801 SNP Detail

Summary

• ID
  rs3155801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25235446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCGC TTGCAGCGGT CTCTCGAGGC
  R
  TCAACGCGCC ACGCGCCGGG GCGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39495833	mCV25256937	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145372927	ENSMUSSNP2097358	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss325335469	CHEV_17_25153417	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3155801					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25235446 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cramp1	cramped chromatin regulator 1			684 bp upstream
Ift140	intraflagellar transport 140			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr405099	regulatory region 405099			411 bp downstream
Rr523471	regulatory region 523471			1253 bp distal
Rr523472	regulatory region 523472			752 bp distal
Rr523473	regulatory region 523473			71 bp distal
Rr523474	regulatory region 523474			651 bp distal
Rr523475	regulatory region 523475			within coordinates
Rr523476	regulatory region 523476			299 bp proximal
Tssr143119	transcription start site region 143119			348 bp downstream
Tssr143120	transcription start site region 143120			49 bp downstream
Tssr143121	transcription start site region 143121			34 bp upstream
Tssr143122	transcription start site region 143122			109 bp upstream
Tssr146805	transcription start site region 146805			769 bp upstream
Tssr146806	transcription start site region 146806			754 bp upstream
Tssr146807	transcription start site region 146807			719 bp upstream
Tssr146808	transcription start site region 146808			681 bp upstream
Tssr146809	transcription start site region 146809			651 bp upstream