rs31557977 SNP Detail

Summary

• ID
  rs31557977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:85287854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCT CGCTCACAAG GGGAGTGCCG
  R
  TGCCTGTGAG CCTGGCTTGT GGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39301900	mCV22539180	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss148266258	ENSMUSSNP6215359	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss325041820	CHEV_15_85234083	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31557977					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85287854 () rs orientation: forward

Symbol	Name	Function Class
Atxn10	ataxin 10	Intron
Rr507188	regulatory region 507188	1382 bp distal
Rr507189	regulatory region 507189	within coordinates
Rr507190	regulatory region 507190	205 bp distal
Tssr132516	transcription start site region 132516	1532 bp downstream