rs31557053 SNP Detail

Summary

• ID
  rs31557053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172462517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACG TGTCAGGGAA GAACTTTCCA
  Y
  GTCTCTCCTC GCCCTTCCGT GCACG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss49751235	NES13026605	PERLEGEN	MM_PANEL2	f	SNP				T		T		C		T
ss120013356	PARCsnp_1.20756	PARC_SEQ	INBRED	f	SNP			C		T
ss120015566	PARCsnp_1.10935	PARC_SEQ	INBRED	f	SNP			C		T
ss146197920	ENSMUSSNP6460989	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			T
ss320126711	CHEV_1_174565081	CHEVERUD	SCREENING_POP	f	SNP							T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs31557053					SNP	T	T	C	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751235	NES13026605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172462517 () rs orientation: forward

Symbol	Name	Function Class
Gm35601	predicted gene, 35601	within coordinates
Rr396594	regulatory region 396594	1756 bp downstream
Rr423643	regulatory region 423643	1894 bp distal
Rr423644	regulatory region 423644	1045 bp distal
Rr423645	regulatory region 423645	1124 bp distal
Tssr10245	transcription start site region 10245	1875 bp downstream