rs31557052 SNP Detail

Summary

• ID
  rs31557052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172462622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCT CTTCTCTAAT GAGCCCCTAG
  R
  CTGCTCTCAG TGTGTCCTCT CTCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49751234	NES13026606	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A		G	A	A	A		A	A		A
ss120013360	PARCsnp_1.20758	PARC_SEQ	INBRED	f	SNP					G		A
ss120015568	PARCsnp_1.10937	PARC_SEQ	INBRED	f	SNP					G		A
ss320126713	CHEV_1_174565186	CHEVERUD	SCREENING_POP	f	SNP										A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31557052					SNP	A	A	A	A	G	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751234	NES13026606	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172462622 () rs orientation: forward

Symbol	Name	Function Class
Gm35601	predicted gene, 35601	within coordinates
Rr396594	regulatory region 396594	1861 bp downstream
Rr423643	regulatory region 423643	1999 bp distal
Rr423644	regulatory region 423644	1150 bp distal
Rr423645	regulatory region 423645	1229 bp distal
Tssr10245	transcription start site region 10245	1980 bp downstream