rs31557028 SNP Detail

Summary

• ID
  rs31557028
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172527393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGTCATC CATCTTACTG
  ATTACATTTA GTGCTTCTTG TATTTTGTTG AAGACTGGAC ACTGGATAAT CTATCAGGAG
  GGCCCCTCCC TGAAGACTGA TTGTCCTTTT CTCAGCAGCC ACTGATTACC TCTAGCTCTT
  CATATAGGGT TCTGTCTTTG TGAAATTTCT TCTGTCCATG TTGCATGTCA ATTGGTGTCA
  K
  TATGCAGGTC TTGTTTGGGC AACCTAGAGT GATGGAGCAC TGACTACACT GTGCTCAGAA
  TCAGTTCTTT TCTGGAATAA AATCTGTACC TGAACTTCCC CAGTCCATGA GTCAATAAAG
  TCACCTTTGG CTTGAATGAA TTTGAGCAGT TTTATGAATA ACTTCATTAT TGACCCTCTG
  AAATCAAGAC TCTAAATTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45045657	mCV24591812	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T
ss146199192	ENSMUSSNP4759380	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			T
ss320126990	CHEV_1_174629957	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31557028					SNP	G	G	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172527393 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Crp	C-reactive protein, pentraxin-related			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
D1Mit149	DNA segment, Chr 1, Massachusetts Institute of Technology 149			496 bp distal
D1Mit149.1	DNA segment, Chr 1, Massachusetts Institute of Technology 149.1			589 bp distal
Rr423654	regulatory region 423654			1761 bp distal
Tssr10246	transcription start site region 10246			1763 bp downstream
Tssr10247	transcription start site region 10247			815 bp downstream
Tssr10248	transcription start site region 10248			760 bp downstream
Tssr10249	transcription start site region 10249			732 bp downstream
Tssr10250	transcription start site region 10250			680 bp downstream
Tssr10251	transcription start site region 10251			626 bp downstream
Tssr10252	transcription start site region 10252			565 bp downstream
Tssr10253	transcription start site region 10253			510 bp downstream
Tssr10254	transcription start site region 10254			447 bp downstream