rs31556594 SNP Detail

Summary

• ID
  rs31556594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:118358387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTAAGGCA ATCACCCCAG
  ATCCTCATAG ACAAGGAGTT AGAGATGATT CGGGCGAGGG AGACTGAAAC TGTTAGAAAT
  TAAGTTCAGG GTTGTATAAA TGACTGGCCA CTATTCCAAC ATAGGTGTCT GGACAAGGCA
  AAGTTTACTC TTGGCCAGGA GGGTGTGCCC CAGAGAGCCA ACCCAGAAAC AGGAAGTACA
  Y
  TTAGTTTTAT TCAAAGGAAG GTGCTGTGGT GATCTGAGTA AAAATGGTGT CCACGGGTCC
  ATAGGGAGTG TAGATATTGG GAGGTGTGAC CTGGTTGGAG TAAGTGTGGC CTTACTTGGG
  GTGGGCTTTG AGGTCTCAGA TGCTCAAGCC ACGCCCAGGG TGAGTTTTTT TCCTGCTGCC
  TGTGAACCCA GATGTAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48064724	NES11726762	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31556594					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48064724	NES11726762	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118358387 () rs orientation: forward

Symbol	Name	Function Class
Bms1	BMS1, ribosome biogenesis factor	1955 bp downstream
Rr637473	regulatory region 637473	1274 bp distal
Rr637474	regulatory region 637474	1731 bp distal