rs31552355 SNP Detail

Summary

• ID
  rs31552355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171017379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCCAGC ACGGGCTGCC
  ACGGTTTAAT GAGTGGTTAT TTGTGGCACT CAGCACACAG CTTGGAGCCG AGCCTTTACC
  CCATACTGAG GAGTAGGGGA TGGGGGGAGA GAGGAAAGCC AAAGCTTCAT TTATTACTAT
  AATCTTCAAT GTGCATCCCA CCAGCGGTGT TAACGTTCTA AAATAAACGT ATTAATCCCC
  Y
  TACAGCCTAC AGAGCAAACA CTCAGCTGGA GGCCTTTGTG TGGGAGGGAG GCGGCACCAA
  ACACAACAGA ATGGTAAGCG GCACCTCTTT TCCCTGGGTG GGGGTTGGAA CCAGGTGATG
  CCTTCTGGAG GCCCGCAGTG GGAAGCAGAA ATCAAGCTTC AGGGTTGATG AAGAAAGCTC
  AGCCCTGTGG TATGAGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45154216	mCV24421027	ABI	CRAMUS_MOUSE	f	SNP		C	T
ss49750811	NES13033748	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	C	C		C	C	C	T		T
ss146156063	ENSMUSSNP7011144	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320116989	CHEV_1_173119941	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31552355					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750811	NES13033748	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171017379 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	within coordinates
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423235	regulatory region 423235	1174 bp distal
Rr423236	regulatory region 423236	139 bp distal
Rr423237	regulatory region 423237	within coordinates
Rr423238	regulatory region 423238	515 bp proximal