rs31552107 SNP Detail

Summary

• ID
  rs31552107
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79958277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAAAAGC TTACATTATA
  AATGAGTAAA ACTAGTTCAA AGCTAATGGG AATCGATAGC TAAATATAGG CAAGCTGAAC
  TATATATAAC TTCAATTCAG AATGTTCTAG AAGACATTCA AAAAACCTCG AAAATTAAAA
  ATATATGTAA AAAAATTTAG TAGACTGCAG AAAGAATGTG ATCATGCTTT AGGGAAAAGA
  W
  AGGGAAATTA AACTTGAGAA ACTATAGTCA TGCAATAAAA TACCTTTAAA AGAGATAAAA
  GAAATGCAGT AAGATGTGGG TAAGGGATTA AATGTCGGAA CACACAGAAG GCAGAGGCAC
  GAGATTTCTG CTTTGAGGTT AGCCGAGTTG ACCAGCACAG TGCAGTCACC CAGAGCTTCA
  GGATGAGATC ATGTCACCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45546282	mCV23377026	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss135378778	ENSMUSSNP3253702	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31552107					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79958277 () rs orientation: forward

Symbol	Name	Function Class
Gm65495	predicted gene, 65495	within coordinates
Rr578632	regulatory region 578632	1958 bp distal
Rr578633	regulatory region 578633	891 bp distal
Rr578634	regulatory region 578634	988 bp proximal
Rr578635	regulatory region 578635	1946 bp proximal