rs31550381 SNP Detail

Summary

• ID
  rs31550381
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116761759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGC ATCTATAAGA ACATTTGTCC
  S
  ATAGAAGGAA TTTGAAGAAA AAACC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45545276	mCV23494722	ABI	CRAMUS_MOUSE	f	SNP	C	G					G		C
ss60435453	NES15933254	PERLEGEN	MM_PANEL2	f	SNP		G	C	G	G	G		G		G		G	G	G		G
ss135676624	ENSMUSSNP5476023	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320897080	CHEV_3_116671028	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31550381					SNP	C	G	C	G	G	G	G	G	C	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435453	NES15933254	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116761759 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			157 bp upstream
Cpgi13743	CpG island 13743			483 bp proximal
Gm52613	predicted gene, 52613			97 bp downstream
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583814	regulatory region 583814			1475 bp distal
Rr583815	regulatory region 583815			906 bp distal
Rr583816	regulatory region 583816			1303 bp distal
Rr583817	regulatory region 583817			67 bp proximal
Rr583818	regulatory region 583818			738 bp proximal
Tssr35360	transcription start site region 35360			428 bp downstream
Tssr35361	transcription start site region 35361			453 bp downstream
Tssr35362	transcription start site region 35362			518 bp downstream
Tssr35363	transcription start site region 35363			566 bp downstream
Tssr35364	transcription start site region 35364			602 bp downstream
Tssr35365	transcription start site region 35365			662 bp downstream
Tssr35366	transcription start site region 35366			680 bp downstream
Tssr35367	transcription start site region 35367			717 bp downstream
Tssr35368	transcription start site region 35368			818 bp downstream
Tssr35369	transcription start site region 35369			859 bp downstream
Tssr35370	transcription start site region 35370			902 bp downstream
Tssr35371	transcription start site region 35371			1404 bp downstream