rs31549544 SNP Detail

Summary

• ID
  rs31549544
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145122307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGCTGCCACG GGTCACTGAT TGTTTTTTGT TTGTTTGTTT GTTTGTTTGT TTCTTCTTTT
  GTACTGGTTG CGAACATAAT GAATTTATTT GATTTTTATA TGTGGGCCAC ATGTAAACAA
  AGGATGCAAC CAGAAATTAT CATTTTCCCT CTAGCAAACA CTTGAGATTA TTACCAGGAA
  ACATTTCTAA GAACAATGAA GTATTTACTT TGTGTGCAGT ATTTCTCATT GAGACAAGAT
  ATTGTGCATT TGAGTGCAGC CTCACTTATG ATTGGCTCCT GGTTTGTTTG TTTTTTTTTC
  Y
  TTAGCATAAG ATTAAGACAT ACAAGGCATG ATAGTAATAC AAGAAAGAAA GGATCATGTG
  GCTGGCTATT ATCTCCTCGT GGCAAACGAT GTCTTCACTT TTCAAGGGAG CTTTCCGGGC
  TTCTCTGCAC TGTGTTTTAA AGGCACTGTC CTACCCTTGG GCTCTGAGGT GTCACAGGAC
  CACTCAAGTG CTACTATAGA AGTCCAAAGT ACAGTTATGA GAGGAGTGCA GAGACTTGTC
  AGTGCCTGGT GAAAAAGGAA GTCTCGTGAG GATATCTTCC TCCCTCCGTA TCTTCTCCCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45545066	mCV23543955	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31549544					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145122307 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr586779	regulatory region 586779			1362 bp proximal
Rr586780	regulatory region 586780			1482 bp proximal