rs31549077 SNP Detail

Summary

• ID
  rs31549077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66577592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAAAACGTTA TTAGAAATGA TCGAATCTCT CTACATAAAA AAGATGTATA ATTAAAGGAT
  ACTCAAGATT CATAAAAGAC GGCTGCACGG GTGACCGCGT GGAATACAGA GTGCCAGCTG
  TTTCTGGGAC GGGCGAGAGA GTCGCAGAGC TTCTGGGCGG CGCCATCTTC AGCTCCAGAC
  AGCCGGCCAC CTTCCTGGTG AGAGCACGGG GTCTGCCTGG CCTGAGAGGT TTGTGGCACA
  GGCGCCGGCG GGAGCCTTCT TGGCTCCGGG ACTCCGCGGA GGGCAGGCTG CACGGGTGAC
  Y
  GTGTGGAATA CAGAGTGCCA GCTGTTTCTG GGACGGGCGA GAGAGTCGCA GAGCTTCTGG
  GCGGCGCCAT CTTCAGCTCC AGACAGCCGG CCACCTTCCT GGTGAGAGCA CGGGGGTCTG
  CCTGGCCTGA GAGGTTTGTG GCACAGGCGC CGGCGGGAGC CTTCTTGGCT CCGGGACTCC
  GCGGAGGGCA GGCTGCACGG GTGACTGTGT GGAATACAGA GTGCCAGCTG TTTCTGGGAC
  GGGCGAGAGA GTCGCAGAGC TTCTGGGCGG CGCCATCTTC AGCTCCAGAC AGCCGGCCAC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45544663	mCV24619047	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31549077					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66577592 () rs orientation: forward

Symbol	Name	Function Class
Gm54200	predicted gene, 54200	within coordinates
Gm65106	predicted gene, 65106	within coordinates
Rr577861	regulatory region 577861	92 bp proximal