rs31547948 SNP Detail

Summary

• ID
  rs31547948
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68189121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATTTTTGG ATTTCATATG AGTGAGGTCA TGTGCATATG
  TCTTTCTGTG CCTGGATTAC TTCACTTACC ATAATCATAT TCAGTTTTAT CCATGTTACC
  R
  TGTTTCTCAA AATGACAGGA TGACAGTATA TCCTTTTAAT GGATGAATAA TATTCATATA
  TGTTTTCTCT TTATCCATTC ATCCATCAGC ACACACATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45545953	mCV24617342	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss135262152	ENSMUSSNP4193172	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320791284	CHEV_3_68085710	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31547948					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68189121 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577989	regulatory region 577989	1388 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr29454	transcription start site region 29454	475 bp upstream