rs31547836 SNP Detail

Summary

• ID
  rs31547836
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95905375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCCCCATCC CTCCCGGCCC CTCCCTCCCA GTAACCTGAA ATATTAACCT TATAGCCCTG
  GCCTTCTCCC TCACCGTTGC TTCGTTGCCT TGACACTGCA TGCTCCTATA AGCCAGCTGG
  TTTGCTTTAA AGCTGGCCTT TCTCACCGAG TGAACCTCAT GGCACCTGCA TTTGGATCTA
  AGTGGGACTG TTTTTAGAGA CCAGTGCTTA AGTGAGAAAT TGGAATAGCA CTTCTGGTTT
  CCTTTACACA TTGTTATAGC ACTCAGTGAG CATCTCTCTC TCTCTCTCTC TCTCTCTCAC
  W
  CACACACACA CACACACACA CACACACACA CACACAACTT GAGCTAATCT CTCTAGGGAG
  ATAAGATCCT GCAGGGACTC ATGTGGCTTA GCATGCCCAC CTGTAAGAGC ATCACCAATA
  GCTCTACTGA GCAGTTAGGG GGATAAGCAA AAACTCTCAG AGGTAACATC TTGTGAATTG
  CTGTTTATAA GTTTACTGGG CAGAAATATC TGAGCTGACA TTTAAAAACA AATATCCTTG
  ACTTTAAAAT CCTATTTTAA AAATAGGATT GGTGTTTTGA CCAGGACATT TTAACCTATG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45545845	mCV25062209	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs31547836					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95905375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13533	CpG island 13533	1554 bp distal
Gm9052	predicted gene 9052	1579 bp downstream
Gm65578	predicted gene, 65578	733 bp upstream
Rr581116	regulatory region 581116	1572 bp distal
Rr581117	regulatory region 581117	243 bp distal
Rr581118	regulatory region 581118	1294 bp proximal
Tssr30675	transcription start site region 30675	1937 bp downstream
Tssr30676	transcription start site region 30676	1903 bp downstream
Tssr34586	transcription start site region 34586	730 bp upstream
Vps45	vacuolar protein sorting 45	1769 bp downstream