rs31547656 SNP Detail

Summary

• ID
  rs31547656
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160760598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTCTGAGTA AAATCAGAGT TTTTAACTAT AATGCGCTAA ATTACTATAG CCAGATTGGC
  ATATTAATAT CAAAGAGAAC GTTATAATGA GAATGAGGTG TGGGATAGTA GGAGTTCTCT
  GAACTGTCTT TGTCATTTTC TGTAAATTTA AAATGCTTCT GTGAAACTGC TTTTGTTTTG
  TTTGTTTGTT TGGTTGGTTT GGTTTGTTTT TAACCAGGAA AAAAATGATT AATCCTACCG
  CTAATCAGGA AAATAGAGAT TTAGATAACA GCAGGGTTTG TTTTTGTTTC TGTTTTTTTT
  K
  TTTTGTTTTG TTTTGTTTTG GTTTTGTTTG TTTGTTTTTG ATCTTCCCAC AAACCAGTGT
  CTGAATGGTG GTCCCATGTG GTCATGCAGG GCTCTTGCAT GTGCTAGGGA GGGTGCAATC
  TGTCAGGCTC TGGAAAATGC GTACAACCCT GTAGCTATAG TGGCTGCACT TACAGGTTAT
  CAAACCAGAT AGTTTTAACA CATACATACA GGGGGCACCT GCAGAGGAAT ATCACTACAG
  TCTCTAAAAG CAACAAGTTA AAAATAGCCT AAACATCAGA ACTGATTCAC TGTGTTGTCT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45044322	mCV24552926	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31547656					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160760598 () rs orientation: forward

Symbol	Name	Function Class
Rc3h1	RING CCCH (C3H) domains 1	Intron
Rr421728	regulatory region 421728	977 bp proximal
Rr421729	regulatory region 421729	990 bp proximal
Rr421730	regulatory region 421730	1287 bp proximal
Rr421731	regulatory region 421731	1524 bp proximal