rs31547548 SNP Detail

Summary

• ID
  rs31547548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39451582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGTGAGAATC TACAATTTCT GAAATGAACT GTTGCATTCA CAGTATGAAA GAAAACAAGA
  CAGAGTTCAG TGAACAACAG TGCTGTAAAA GAATATTCTA GAGACTTAGG AGATATACAG
  GGGCACAGAC TGGAAAACAA AATATCCCAC AAGGCAAAAC CTCCAAAGAG TATCTGAAAG
  CCAAAGCTGG TAGCAATAAA AAGAACCAAT AAGCCTTTGC TGTTTAAATT GCTGCTCAGA
  GTAGAACGCC TTTTCAGCTG GAACCTTTAT TTCCCTCTGT GGAGGCTAGG ATGAGAGAGA
  Y
  GATGTCACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACTTCCGTCT
  GCTCTCAGCT AAAGGGCTCC AGCATTCATA AGACATAAAG CCAGCAACCT CATAATGAAA
  AGATGATTAC ATTTCATATA TGCCTCCCTT AGGAAGAAAG AAAAAAAAAA CCTATCATTT
  AAAATGAGGT TAGCCAGCAA ATACAATTGC TTAATTTCAG CATGGGGTCG CATCCCAGTC
  AGAGCTTTAT AGGCACATTA GCAAGCATTA TTTTTAGTGT GTTTTTCTAC CAAATCCATT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45546235	mCV24763517	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss134850322	ENSMUSSNP6783411	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31547548					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39451582 () rs orientation: forward

Symbol	Name	Function Class
Rr575754	regulatory region 575754	within coordinates