rs3154738 SNP Detail

Summary

• ID
  rs3154738
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:46607741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCAGGGC AATCTGAACG
  GCCAGGATCA CTAAACAAGG TAACCTCTGA ACTAGACAGC CCTAGTATGC TCGAGGGCGG
  GAGTCAGGAA TGCTGAGCAT ACAGCCTGGG GGTGGGGTGG GTAGAGACTT GAGGGTGGAA
  GAAACCTCCA TCCACCTTTC CACAGTAAAG CCCTGTCCAG GCCTGCACTC GCGTCTGCGG
  K
  GTTCTCGTTG TGAGTACCTA CAATGTGACC ACAGTGCTAG ATGAGAGGAC TACAGAGACA
  AGAGTACAGT GTACAGTCAC AAACGCTCCA GGAGGAAGCA CGGCGGAGAA TGGCTTCCAC
  AAGGTGATAA CCCGGATTTC TCAAAGCAGG TAGAGACACT AGCAGGGAGT GACTCATTCA
  AGGGGGGCGA GGCACCGCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51891872	NES14911534	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3154738					SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891872	NES14911534	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46607741 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm39012	predicted gene, 39012			within coordinates
Rr646810	regulatory region 646810			88 bp distal
Rr646811	regulatory region 646811			within coordinates
Rr646812	regulatory region 646812			524 bp proximal
Rr646813	regulatory region 646813			546 bp proximal
Rr646814	regulatory region 646814			557 bp proximal
Tssr72574	transcription start site region 72574			451 bp downstream
Tssr72575	transcription start site region 72575			482 bp downstream
Uevld	UEV and lactate/malate dehyrogenase domains			Intron
				Noncoding-Transcript-Variant