rs3154731 SNP Detail

Summary

• ID
  rs3154731
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:46606334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTGTCT GAATGCCTCC
  TTCACTAGAG ACAACTTGAC TTTCCCTTGT CCGCCTCCAG CTGGTATCTT AGATTTTACA
  GGGGAAAGAA ATACAAGCAA GAGTTTGCTA CAAGCTGGTG AACTGCCTCT CCCTGTCTTT
  CTTTGTGGCC TTGTGGGCGC CATCATGTAA CTTCTCTCAA CTTATTTTCT TACCTACAAA
  R
  AAAAATCCTA CCCACTCCCG AGGCTCACCA TGAGGATTAA TTGAGAGGAG GCAGTTTATC
  AACATCATGG AAATCGAATA AAACTACTTG GAAATCAGTT CAGAAAGGTA CAGAAGGGAT
  ATTGAAAACC TACCACTGTT GGAAGAAATA AAATGGAAAG GTTTTTTTTT TGTTGTTGTT
  GTTTGTTTTG TTTTTTCGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149183198	ENSMUSSNP3794900	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs3154731					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46606334 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19131	CpG island 19131			1488 bp proximal
Gm39012	predicted gene, 39012			1297 bp upstream
Rr646810	regulatory region 646810			1171 bp proximal
Rr646811	regulatory region 646811			1320 bp proximal
Rr646812	regulatory region 646812			1931 bp proximal
Rr646813	regulatory region 646813			1953 bp proximal
Rr646814	regulatory region 646814			1964 bp proximal
Tssr72574	transcription start site region 72574			1858 bp downstream
Tssr72575	transcription start site region 72575			1889 bp downstream
Uevld	UEV and lactate/malate dehyrogenase domains			Intron
				Noncoding-Transcript-Variant