rs31546910 SNP Detail

Summary

• ID
  rs31546910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148693649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCG CGCGGCCACA TCTGGCTGTG
  Y
  TTTGCTCTCA ACCTCGCCTC TCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45545743	mCV22571221	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136065991	ENSMUSSNP1648425	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss321017036	CHEV_3_148650977	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31546910					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148693649 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Cpgi13930	CpG island 13930	within coordinates
Gm43573	predicted gene 43573	within coordinates
Rr587240	regulatory region 587240	369 bp distal
Rr587241	regulatory region 587241	632 bp proximal
Rr587242	regulatory region 587242	1304 bp proximal
Tssr36077	transcription start site region 36077	1081 bp downstream
Tssr36078	transcription start site region 36078	1089 bp downstream
Tssr36079	transcription start site region 36079	1335 bp downstream
Tssr36080	transcription start site region 36080	1365 bp downstream
Tssr36081	transcription start site region 36081	1392 bp downstream
Tssr36082	transcription start site region 36082	1430 bp downstream
Tssr36083	transcription start site region 36083	1500 bp downstream
Tssr36084	transcription start site region 36084	1519 bp downstream
Tssr36085	transcription start site region 36085	1543 bp downstream
Tssr36086	transcription start site region 36086	1699 bp downstream
Tssr36087	transcription start site region 36087	1973 bp downstream