rs31546701 SNP Detail

Summary

• ID
  rs31546701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:81818231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGAATGAGAT TCAGAGGTTG TTGGGTAATT AAGCACTGCA
  TGTTCTGGAC TGTCGAATTT TAATCATGGG AGCTAGATCT GGAAGAAAAT GAAACACATG
  Y
  TCTTACCTTG CCTGAGATGA TGGTATTTTG AGTCATACAA GAATCTAGGG TATTGAGGCA
  TGCCCAGGGC AGAGTCAGAT CCAATATTTG TCATTAACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45543983	mCV23520648	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss135398649	ENSMUSSNP3716969	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320817065	CHEV_3_81714846	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs31546701					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81818231 () rs orientation: forward

Symbol	Name	Function Class
Gm9989	predicted gene 9989	within coordinates
Rr375244	regulatory region 375244	91 bp downstream
Rr578719	regulatory region 578719	within coordinates