rs31546666 SNP Detail

Summary

• ID
  rs31546666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83977129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT GGTGACACTT GCTCACTTGC
  Y
  ACCTGTGGCT TCCCAAGGAA AAGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45545437	mCV24158877	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135420298	ENSMUSSNP6124574	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320822204	CHEV_3_83873744	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31546666					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83977129 () rs orientation: forward

Symbol	Name	Function Class
Gm56775	predicted gene, 56775	within coordinates
Rr397735	regulatory region 397735	344 bp downstream
Rr578974	regulatory region 578974	382 bp distal
Rr578975	regulatory region 578975	22 bp distal
Rr578976	regulatory region 578976	1657 bp proximal
Rr578977	regulatory region 578977	1966 bp proximal