rs31544894 SNP Detail

Summary

• ID
  rs31544894
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130727809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACAATATC GCTGAGAGAT AAGTAACATT TGTTAAGTGG
  AGAAGCAAAA ATTCCAACCT CCGACTTGGC CCAGTCTGAA CTCTCTGCTA CTGGTTCCGA
  Y
  GTCACTAATG GAACTCAAGT GCTTGACTGA GAAGTTTGAA ATGGAAAGCC ATGAAGGATG
  CCACAGATTA CCATACCCAT AAATAGTATA CACTGTAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45546196	mCV23363602	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss135902508	ENSMUSSNP3959663	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31544894					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130727809 () rs orientation: forward

Symbol	Name	Function Class
2010110G14Rik	RIKEN cDNA 2010110G14 gene	within coordinates
Gm64594	predicted gene, 64594	124 bp upstream
Gm64601	predicted gene, 64601	697 bp downstream
Rr585238	regulatory region 585238	1571 bp distal
Rr585239	regulatory region 585239	1207 bp proximal