rs31544272 SNP Detail

Summary

• ID
  rs31544272
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67423329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGG TTGAAGCCAG ATTCCAGTGG
  M
  GTGAGGTGTG GAATCAACGC GTCAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45543755	mCV27557808	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss135258417	ENSMUSSNP1914494	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31544272					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67423329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13247	CpG island 13247	115 bp distal
Gm40067	predicted gene, 40067	within coordinates
Rarres1	retinoic acid receptor responder (tazarotene induced) 1	473 bp upstream
Rr577936	regulatory region 577936	445 bp distal
Rr577937	regulatory region 577937	128 bp distal
Rr577938	regulatory region 577938	325 bp distal
Tssr33502	transcription start site region 33502	512 bp upstream
Tssr33503	transcription start site region 33503	494 bp upstream
Tssr33504	transcription start site region 33504	342 bp upstream
Tssr33505	transcription start site region 33505	296 bp upstream
Tssr33506	transcription start site region 33506	259 bp upstream