rs31543988 SNP Detail

Summary

• ID
  rs31543988
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51917738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTACCAGGGA CTCCCTCCCA TTTGGAGAAA GAATCCGTTT AATTAGAAAA GCAAGCTACA
  GTCTTCTGAA GCCTAGCTAA AAAATGCCCA TAATGACTGT AACAATATCC ACACGTACAG
  GAGTCCTGGC TCCAGGAAAT ATGCAGCAAC AGTCTGAACA ATTCTGGTTA CACACACAAT
  ACCACCACCA CCACCACCAC CACACACACA CACACACACA CACAAAGCAC ACATACAAAA
  TACACAATAC ACATATACCA CACACACACA CCACACTTTA CCCACACCAC AATACATGTG
  S
  TACATATAAC TTTCCCCTTC CTCATCACAC ATACCACACA CTCACGTATA GATACCACAC
  ACATACCTAC CTACATGATA GACAGCACAC ATAGAGACAT AGACACACAC ACACATACAC
  GCTGCTAAAA AGGTAGTAGG CTTAAAGTCA TATTAGAAGT ATCAAGAACA GTTAGCGTGG
  GCGATCACAG CATCAGCCAT TCAGGAGCCC CTAACTCCTT TCATCCTGAG CAAAGCATGT
  AAGGTGTCTT CACCCTACAT GATAATCAGA ATGCACAGCA ATGCAGGAGG CTCCAGCATC
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45545200	mCV24528067	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31543988					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51917738 () rs orientation: forward

Symbol	Name	Function Class
Maml3	mastermind like transcriptional coactivator 3	Intron
Rr576436	regulatory region 576436	749 bp distal
Rr576437	regulatory region 576437	759 bp proximal
Tssr876	transcription start site region 876	1096 bp upstream
Tssr33242	transcription start site region 33242	1222 bp upstream
Tssr33243	transcription start site region 33243	1160 bp upstream
Tssr33244	transcription start site region 33244	1136 bp upstream
Tssr33245	transcription start site region 33245	1077 bp upstream