rs31543528 SNP Detail

Summary

• ID
  rs31543528
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102181878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTCACAG AAAACAGATC
  ACAACACCGT TCATCTCTAC ATTGCCTGCT GCCAGAGTTT TGTTAACCTG ACACAACGGA
  ACCATACCTG GGAAGAGGGC ATCTCACCTG AGGAATTGTC TCCATTAGTG GGCTTGTAGG
  AATGTCCGTG GGGTATTTTC TTGATTAATG ATTGATCCAC ACTAGAAGGC CCGGCCCACC
  R
  TGGGTTGTGC AATTCTTAGG CAGGTAGCTT AGAAAGTAGA TGAACAATCC GATAAGCTTC
  TCACCTCTGT GCTTTCTGCT TCAGTTTCTG CCTCTAGGTC CAGGTTTCTG CTTTGAGTTC
  CTAGCCTGAC TTCTCTGAAT GATTGACTAT GGCATCGAAG CACAAGCCAA ATCAAACCTT
  TCCTCCCCAG GCTGCTTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss45544400	mCV25068835	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss135555694	ENSMUSSNP241109	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320855296	CHEV_3_102078485	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs31543528					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102181878 () rs orientation: forward

Symbol	Name	Function Class
A230001M10Rik	RIKEN cDNA A230001M10 gene	within coordinates
Gm65464	predicted gene, 65464	within coordinates
Rr582219	regulatory region 582219	692 bp proximal
Rr582220	regulatory region 582220	1172 bp proximal
Rr582221	regulatory region 582221	1427 bp proximal