rs31543277 SNP Detail

Summary

• ID
  rs31543277
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87343835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGCCCATG GATATGCATG CATTTCTGTC AGTTCATGCC
  TACAAAGGGT TTGCTTCTTA CTAAATTTTA AATGGAATTA AATGTGGGTT CATCTATTTT
  W
  AAAAAGTTCT TAGGCCGGGC AGTGGTGGCG CATGCCTTTA ATCCTAGCAC TTGGGAGGCA
  GAGGCAGGAG GATTTCTGAG TTCGAGGCCA GCCTGGTCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45546089	mCV24898882	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss135461491	ENSMUSSNP6122732	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320833447	CHEV_3_87240450	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31543277					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87343835 () rs orientation: forward

Symbol	Name	Function Class
Fcrl5	Fc receptor-like 5	Intron
Rr397756	regulatory region 397756	627 bp downstream
Rr579488	regulatory region 579488	633 bp distal
Tssr29807	transcription start site region 29807	741 bp downstream
Tssr29808	transcription start site region 29808	709 bp downstream
Tssr29809	transcription start site region 29809	699 bp downstream