rs31543040 SNP Detail

Summary

• ID
  rs31543040
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27171742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAAAGAA AGAACCCAAA
  ATGCACCATT GGTGAAAAAA AAGTATTAAA ATATATGGTC CTGAATAAAA CTGGTCGTTT
  ATGTTGGATT TTGAAGAATT ATTAGTAAGT TTTGATGTGG GAATAAGACA AGCTAAGGTG
  CTATTTTAAA GCATAGCCAT GTAAAAGTTG TTTGACTTTT AAGAGAGGAT ATTCCTCAAG
  W
  TGGTGTAACA CTTTCATTAG AAACCATGAA GACATCAGTC TGCACCTAGG GAAGGAGCTG
  ATGGGGAGCC ACGTGTGAAG AAAATGGATA CATTAATGTA TACATAGAGA AATTACAGTA
  ATAAAGCTAA GGCTCAACGA GGACAAGCGA GTTAAGTTAA GGAACGCTTC CTCCATGAGC
  TTACCTTCTG TCTCTCGGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45545694	mCV24689223	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss134702170	ENSMUSSNP2281958	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31543040					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27171742 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Rr574348	regulatory region 574348	828 bp proximal