rs31542023 SNP Detail

Summary

• ID
  rs31542023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102182747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC AGCTGCTTGC GTGCCCTGCT
  Y
  CTCACCTCCT GGCCTGCAGC TGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45543732	mCV25068844	ABI	CRAMUS_MOUSE	f	SNP		C	T					T
ss51586187	NES14666164	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	T		C	T	C	C		C	C	T		T
ss135555709	ENSMUSSNP5967679	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss320855305	CHEV_3_102079354	CHEVERUD	SCREENING_POP	f	SNP													C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31542023					SNP	C	C	T	C	T	T	T	T	C	T	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51586187	NES14666164	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102182747 () rs orientation: forward

Symbol	Name	Function Class
A230001M10Rik	RIKEN cDNA A230001M10 gene	within coordinates
Gm65464	predicted gene, 65464	within coordinates
Rr582219	regulatory region 582219	within coordinates
Rr582220	regulatory region 582220	303 bp proximal
Rr582221	regulatory region 582221	558 bp proximal