rs31540020 SNP Detail

Summary

• ID
  rs31540020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74471234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTATTA TTATTATTGT
  TGTTGTTGTT GTTTGTTATT ATTATTACTA TTATTGTTAT TGTTATTGTT ATTATTATTA
  TTATTATTAT TATTATTATT ATTATTATTA TTATACTTCC ACTAAATCTA AGCTCACTGT
  TTGCCTAGTA AGCTCTGGGA TCAGCCTGCC TCCACAACAC TGGAGTTACC ATGGTGTGTG
  Y
  ATGGCCATAC CTGGCTTTCA CGTGGATGCT GAATTTAAAC TCAGCCCCTA CCCCCTTGTT
  CTTGCCCATG GCACCATCTC CCCAACTCTA GGCTGGTGTT TTGCTTTGTT CTGTTTTAAC
  CTCAGAATCT GCATATAAGG CTTAGCATGT TGCCTGTTTT AGCAAACAAT GGCTCACTAT
  TTGAACACAA CATGTCAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39300946	mCV22971249	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss148147077	ENSMUSSNP5623452	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31540020					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74471234 () rs orientation: forward

Symbol	Name	Function Class
Tssr131567	transcription start site region 131567	1557 bp downstream