rs31534758 SNP Detail

Summary

• ID
  rs31534758
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116244349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCATCTG TAATAGGATC
  TGATGCCCTC TTCTGGTGTA GAAGAAAGCT ACAGGGTATC ATACACTTAA ATAAATCTTA
  AAAGAGAATA TAAAGTGGAA AGTGATAGAG GAGGCCATCT GATGTTGACT GCTGGTCTCC
  ACATGCAAAT ATATACATGC ACACAATGTA TACACATGTG CACAAAAGGC TGAAAATACT
  S
  GCTTTAAAAT CTAGCCTAAA TAAGTTTTTT AAACTTTATA ACCTGTGTAC AGTTTTGCTT
  CATAATTGTC AGAAAATGGG GAATGTAAGA TATTTCTCAG GATAATGGAT AAATGAAACT
  AATGCATACA CACAGTAGAA TATAATATAG CACTTAAAGG AAAGCCATGA AGCCATAAAA
  TGGCACAAAA GAACCTTAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061994	NES11710230	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31534758					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061994	NES11710230	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116244349 () rs orientation: forward

Symbol	Name	Function Class
Rr637179	regulatory region 637179	1508 bp distal
Rr637180	regulatory region 637180	282 bp distal
Rr637181	regulatory region 637181	160 bp distal
Zfand4	zinc finger, AN1-type domain 4	Intron