rs31534756 SNP Detail

Summary

• ID
  rs31534756
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116243481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGATGT TGTGGGATCC
  TTGGTATTGG AGCCGCGGCT CTGGGGAGAG GTGTCTGGTT ACTAGGCAGG CTTTGCATTA
  TAAGCAGGCA TTCTCTTTGA AGTGTGCCCC TCTCCGCGGA GCTGAGCTTT GAAAGCCGAT
  TGGTAGCTTC TCAGGAAGCC TGGGAGGAGT TGGCCTGAGT AGGACAAAGC GGGAGCTCTA
  R
  GACTATGAGT AAGCTATGAG TAGAGGTACA AGGAGCGCAG GCATTGCTGG GGGAGTGCGG
  GTAAGTGAGC ATGGCTGGGA GATGAAATAT GCATGCTGGG AAGTCTTTCT AAGGAGTTTG
  AACATTGTTG GACAGATGGT GGAAGCCATG ATAGGGCCTT GAGCTAGAAA TAATAGGATC
  AGTTTACATT TTCAAAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061992	NES11710265	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31534756					SNP	A	A	G	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061992	NES11710265	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116243481 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17882	CpG island 17882			1884 bp distal
Rr637178	regulatory region 637178			1708 bp distal
Rr637179	regulatory region 637179			640 bp distal
Rr637180	regulatory region 637180			within coordinates
Rr637181	regulatory region 637181			687 bp proximal
Zfand4	zinc finger, AN1-type domain 4			Intron
				mRNA-UTR