rs31533962 SNP Detail

Summary

• ID
  rs31533962
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116243357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTGAAGT GAGTGATAGA
  GACATTGTCC CTCCCTTACA ACGCTTGTAG TTTACCAGCA CGGGTGACAG ACACAGAAAC
  AGTCCAGTTT TGATGGGTAT CATGGGTGGA AAAGATAGTA AGCATGAAAG ATGTTGTGGG
  ATCCTTGGTA TTGGAGCCGC GGCTCTGGGG AGAGGTGTCT GGTTACTAGG CAGGCTTTGC
  W
  TTATAAGCAG GCATTCTCTT TGAAGTGTGC CCCTCTCCGC GGAGCTGAGC TTTGAAAGCC
  GATTGGTAGC TTCTCAGGAA GCCTGGGAGG AGTTGGCCTG AGTAGGACAA AGCGGGAGCT
  CTAAGACTAT GAGTAAGCTA TGAGTAGAGG TACAAGGAGC GCAGGCATTG CTGGGGGAGT
  GCGGGTAAGT GAGCATGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061988	NES11710261	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	T	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31533962					SNP	A	A	T	A	A	T	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061988	NES11710261	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116243357 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17882	CpG island 17882			1760 bp distal
Rr637178	regulatory region 637178			1584 bp distal
Rr637179	regulatory region 637179			516 bp distal
Rr637180	regulatory region 637180			within coordinates
Rr637181	regulatory region 637181			811 bp proximal
Zfand4	zinc finger, AN1-type domain 4			Intron
				mRNA-UTR