rs31531216 SNP Detail

Summary

• ID
  rs31531216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116205077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCAGAG GGCTCGTATT
  GTTTTTGCTT TGGTGCATCC TCTCCCCTCC TCCGAGGTCC ACACTGATGT CCTTCCTGTG
  CTTTTACTCT CTGACGGAGC TATGCCTGGG GAGTCAGGAA AGCTGTGGTC TTTCTGTTTA
  GTGGGTCTTT GTTCGATTTT GAAAAGAATG AGCTGCTGGA GGGATGGCTC AGATGTTCTG
  R
  GTACGTTCTA CACGTCCTGG GAACGATGCC CGGACCTCCA GCTGTGCAAG GGCAAAGATA
  GGATCCTCCA GCTGTGCAAG GGCAGAGATA GGATCCTCCA GCTGTGCAAG GGCAGAGATA
  GGATCCTCCA GCTGTGCAAG GGCAGAGATA GGGTCCCCGG GCTTTGCTGG CTTTGAGGCA
  GGTAGAGAAA ACACAAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061756	NES11712229	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	A	A	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31531216					SNP	G	G	A	G	G	A	A	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061756	NES11712229	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116205077 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr637172	regulatory region 637172			within coordinates
Rr637173	regulatory region 637173			732 bp proximal
Tssr58357	transcription start site region 58357			1852 bp downstream
Tssr58358	transcription start site region 58358			1136 bp downstream
Washc2	WASH complex subunit 2			Intron
				Noncoding-Transcript-Variant