rs31531099 SNP Detail

Summary

• ID
  rs31531099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171485960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTA GGTGTGTCTG GTGAGCGAGC
  R
  TGCTCAGAGA AGGGGAAAAC GAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J
ss45148426	mCV24408137	ABI	CRAMUS_MOUSE	f	SNP	A		G		A
ss49748936	NES13034183	PERLEGEN	MM_PANEL2	f	SNP		G		A			G
ss120001837	PARCsnp_1.14996	PARC_SEQ	INBRED	f	SNP			G		A
ss120004133	PARCsnp_1.04335	PARC_SEQ	INBRED	f	SNP			G		A
ss146171785	ENSMUSSNP38694	ENSEMBL	ENSEMBL_Sanger	f	SNP	A				A
ss320120211	CHEV_1_173588523	CHEVERUD	SCREENING_POP	f	SNP						A		A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J
rs31531099					SNP	A	G	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748936	NES13034183	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171485960 () rs orientation: forward

Symbol	Name	Function Class
Gm70589	predicted gene, 70589	1901 bp downstream
Rr423376	regulatory region 423376	117 bp proximal
Rr423377	regulatory region 423377	515 bp proximal