rs31530726 SNP Detail

Summary

• ID
  rs31530726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171674766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTAAAT CAGTCCTCCT
  TTGACTTGTG CTACAGCTTC TGCCACAGCA ATGGAATCTG AACATACATC ATTCATCCTG
  CATCGGTGAT AGCCTTTTCT AGTCTTTGTT TCTCCTTTAG AAGCATGGCC TCGTCTTACT
  CTTCCCATTT CTGGTCCGCT ATATGGAAGT TGGGAAATAA GCCTAGTCAG CTGATGTTGT
  Y
  GCTGTGAGAC ATTTCTTCTT TACCTGGATC CTAAGGTTTC TGCAACTATT TGGTCTGCCT
  CATCAATTTC TTGTTAGCTT ATAAGACCCT GTCTCAAATT TTTTTTTGCA TCAACATAAT
  TGAAACCACC ATTCATATGT ACTATCCAGA TATCCATAAG TGCTATTTCA TTGCACATTA
  TTTGTTATCC ACATTTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49748437	NES13030853	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31530726					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748437	NES13030853	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171674766 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd84	CD84 antigen			Intron
				Noncoding-Transcript-Variant
Rr423403	regulatory region 423403			1834 bp distal
Rr423404	regulatory region 423404			1667 bp proximal
Tssr291	transcription start site region 291			1616 bp upstream
Tssr10105	transcription start site region 10105			1515 bp downstream
Tssr10106	transcription start site region 10106			1481 bp downstream
Tssr10107	transcription start site region 10107			1464 bp downstream
Tssr10108	transcription start site region 10108			1351 bp downstream
Tssr10109	transcription start site region 10109			848 bp upstream
Tssr10110	transcription start site region 10110			869 bp upstream
Tssr10111	transcription start site region 10111			1184 bp upstream
Tssr15121	transcription start site region 15121			1660 bp upstream