rs31530725 SNP Detail

Summary

• ID
  rs31530725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171674782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATG TTGTCGCTGT GAGACATTTC
  Y
  TCTTTACCTG GATCCTAAGG TTTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45157165	mCV24401890	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss49748436	NES13030854	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		T	C	C	T		T	C	T	C		C
ss120003746	PARCsnp_1.15950	PARC_SEQ	INBRED	f	SNP								T		C
ss120006260	PARCsnp_1.05398	PARC_SEQ	INBRED	f	SNP								T		C
ss146176011	ENSMUSSNP3050750	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320121275	CHEV_1_173777346	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31530725					SNP	C	C	C	C	C	T	C	T	T	C	C	T	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748436	NES13030854	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171674782 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd84	CD84 antigen			Intron
				Noncoding-Transcript-Variant
Rr423403	regulatory region 423403			1850 bp distal
Rr423404	regulatory region 423404			1651 bp proximal
Tssr291	transcription start site region 291			1632 bp upstream
Tssr10105	transcription start site region 10105			1531 bp downstream
Tssr10106	transcription start site region 10106			1497 bp downstream
Tssr10107	transcription start site region 10107			1480 bp downstream
Tssr10108	transcription start site region 10108			1367 bp downstream
Tssr10109	transcription start site region 10109			832 bp upstream
Tssr10110	transcription start site region 10110			853 bp upstream
Tssr10111	transcription start site region 10111			1168 bp upstream
Tssr15121	transcription start site region 15121			1676 bp upstream