rs31530724 SNP Detail

Summary

• ID
  rs31530724
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171674881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGAAGCA TGGCCTCGTC
  TTACTCTTCC CATTTCTGGT CCGCTATATG GAAGTTGGGA AATAAGCCTA GTCAGCTGAT
  GTTGTCGCTG TGAGACATTT CTTCTTTACC TGGATCCTAA GGTTTCTGCA ACTATTTGGT
  CTGCCTCATC AATTTCTTGT TAGCTTATAA GACCCTGTCT CAAATTTTTT TTTGCATCAA
  M
  ATAATTGAAA CCACCATTCA TATGTACTAT CCAGATATCC ATAAGTGCTA TTTCATTGCA
  CATTATTTGT TATCCACATT TGAAATGAGG AGTTAAGGGT CATTGGATTT CAATAATTTT
  TTTTCAAGAC TAAGTTGGTA GGTTCAAATA CACCTGAATC TACCATGTAT ATACATCATT
  GGCATACATT CTACCAAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49748435	NES13030855	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	A	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31530724					SNP	C	C	C	C	C	C	A	C	C	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748435	NES13030855	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171674881 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd84	CD84 antigen			Intron
				Noncoding-Transcript-Variant
Rr423403	regulatory region 423403			1949 bp distal
Rr423404	regulatory region 423404			1552 bp proximal
Tssr291	transcription start site region 291			1731 bp upstream
Tssr10105	transcription start site region 10105			1630 bp downstream
Tssr10106	transcription start site region 10106			1596 bp downstream
Tssr10107	transcription start site region 10107			1579 bp downstream
Tssr10108	transcription start site region 10108			1466 bp downstream
Tssr10109	transcription start site region 10109			733 bp upstream
Tssr10110	transcription start site region 10110			754 bp upstream
Tssr10111	transcription start site region 10111			1069 bp upstream
Tssr15121	transcription start site region 15121			1775 bp upstream