rs31530649 SNP Detail

Summary

• ID
  rs31530649
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116507255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGG GTCTCACATT GTAGCTCAGG
  M
  TGGCTCCAGG CTGGCATTGA AGGTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45543646	mCV23407507	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss135671154	ENSMUSSNP391716	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320895942	CHEV_3_116416524	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31530649					SNP	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116507255 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13739	CpG island 13739	1097 bp distal
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr583765	regulatory region 583765	1386 bp distal
Rr583766	regulatory region 583766	1189 bp distal
Rr583767	regulatory region 583767	967 bp distal
Rr583768	regulatory region 583768	502 bp distal
Slc35a3	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	889 bp upstream
Tssr35331	transcription start site region 35331	1822 bp upstream
Tssr35332	transcription start site region 35332	1759 bp upstream
Tssr35333	transcription start site region 35333	1741 bp upstream
Tssr35334	transcription start site region 35334	1724 bp upstream
Tssr35335	transcription start site region 35335	1366 bp upstream
Tssr35336	transcription start site region 35336	1337 bp upstream
Tssr35337	transcription start site region 35337	1096 bp upstream
Tssr35338	transcription start site region 35338	951 bp upstream
Tssr35339	transcription start site region 35339	883 bp upstream