rs31529721 SNP Detail

Summary

• ID
  rs31529721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171675893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT TCTTGCATAT CTGCTTTGTA
  Y
  TATTAATTTT CCACTGATAG AGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45138097	mCV24401867	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss49748431	NES13030789	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T		C	T	T	T		C	T	T	T		T
ss120003756	PARCsnp_1.15955	PARC_SEQ	INBRED	f	SNP								C		T
ss120006273	PARCsnp_1.05404	PARC_SEQ	INBRED	f	SNP								C		T
ss146176032	ENSMUSSNP111362	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss320121281	CHEV_1_173778457	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31529721					SNP	T	T	T	T	T	C	T	C	C	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748431	NES13030789	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171675893 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd84	CD84 antigen			Intron
				Noncoding-Transcript-Variant
Rr423404	regulatory region 423404			540 bp proximal
Rr423405	regulatory region 423405			1040 bp proximal
Tssr292	transcription start site region 292			1328 bp upstream
Tssr10109	transcription start site region 10109			266 bp downstream
Tssr10110	transcription start site region 10110			234 bp downstream
Tssr10111	transcription start site region 10111			57 bp upstream
Tssr10112	transcription start site region 10112			1502 bp upstream
Tssr15122	transcription start site region 15122			1186 bp downstream
Tssr15123	transcription start site region 15123			1204 bp downstream
Tssr15124	transcription start site region 15124			1216 bp downstream