rs31529716 SNP Detail

Summary

• ID
  rs31529716
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171676889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATG CAATATTTAG AATACATAAC
  M
  AATTGGTCAT GATCAATACC AGGAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45162500	mCV24401856	ABI	CRAMUS_MOUSE	f	SNP		A	A					C		A
ss49748426	NES13030794	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	C	A		C	A	A	C		A	A		A
ss120003762	PARCsnp_1.15958	PARC_SEQ	INBRED	f	SNP								C		A
ss120006279	PARCsnp_1.05407	PARC_SEQ	INBRED	f	SNP								C		A
ss146176042	ENSMUSSNP627389	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss320121284	CHEV_1_173779453	CHEVERUD	SCREENING_POP	f	SNP													A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31529716					SNP	A	A	A	A	A	C	A	C	C	A	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748426	NES13030794	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171676889 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd84	CD84 antigen			Intron
				Noncoding-Transcript-Variant
Rr423404	regulatory region 423404			272 bp distal
Rr423405	regulatory region 423405			44 bp proximal
Tssr292	transcription start site region 292			332 bp upstream
Tssr10109	transcription start site region 10109			1262 bp downstream
Tssr10110	transcription start site region 10110			1230 bp downstream
Tssr10111	transcription start site region 10111			916 bp downstream
Tssr10112	transcription start site region 10112			506 bp upstream
Tssr15122	transcription start site region 15122			190 bp downstream
Tssr15123	transcription start site region 15123			208 bp downstream
Tssr15124	transcription start site region 15124			220 bp downstream