rs31528582 SNP Detail

Summary

• ID
  rs31528582
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171677692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAG CTTAGCCCAT GCACATGCTA
  K
  CCCTGAGATG CAAGCTAAGA TACTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45197811	mCV24401574	ABI	CRAMUS_MOUSE	f	SNP	T	T			G		T
ss49748420	NES13030754	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G		T	T	T	T		G	T		T
ss120003769	PARCsnp_1.15962	PARC_SEQ	INBRED	f	SNP					G		T
ss120006286	PARCsnp_1.05411	PARC_SEQ	INBRED	f	SNP					G		T
ss146176067	ENSMUSSNP3109548	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss320121289	CHEV_1_173780256	CHEVERUD	SCREENING_POP	f	SNP										T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31528582					SNP	T	T	T	G	G	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748420	NES13030754	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171677692 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd84	CD84 antigen			Intron
				Noncoding-Transcript-Variant
Rr423404	regulatory region 423404			1075 bp distal
Rr423405	regulatory region 423405			261 bp distal
Tssr292	transcription start site region 292			469 bp downstream
Tssr10111	transcription start site region 10111			1719 bp downstream
Tssr10112	transcription start site region 10112			280 bp downstream
Tssr10113	transcription start site region 10113			1727 bp upstream
Tssr10114	transcription start site region 10114			1776 bp upstream
Tssr10115	transcription start site region 10115			1835 bp upstream
Tssr10116	transcription start site region 10116			1857 bp upstream
Tssr10117	transcription start site region 10117			1870 bp upstream
Tssr10118	transcription start site region 10118			1889 bp upstream
Tssr10119	transcription start site region 10119			1905 bp upstream
Tssr10120	transcription start site region 10120			1926 bp upstream
Tssr10121	transcription start site region 10121			1967 bp upstream
Tssr15122	transcription start site region 15122			603 bp upstream
Tssr15123	transcription start site region 15123			588 bp upstream
Tssr15124	transcription start site region 15124			577 bp upstream