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rs31528581 SNP Detail
Summary
  • ID
    rs31528581
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:171677909 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GCAACATTAG CAAAGCTTTA TGTTCTCTGT GTTTTCTTCT
    TGTTGCCCTT CCACTTGCCA CTCATTATGC CACCTTTTGC TTTCTGGGGG TTCCTTAGGG
    Y
    TGTCCTGGTA TCCTACTATC CCTGTGGTCC TAACATAGCA TCTGATGTAT AGTCCTAACA
    TAGATAGCAT AGTATTAAGT TAGCAGTTAA CAAGTGCTAA                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss49748419 NES13030755 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C T C C T C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs31528581 SNP C C C C C C C C C T C C T C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49748419 NES13030755 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:171677909 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cd84 CD84 antigen Intron
Noncoding-Transcript-Variant
Rr423404 regulatory region 423404 1292 bp distal
Rr423405 regulatory region 423405 478 bp distal
Tssr292 transcription start site region 292 686 bp downstream
Tssr10111 transcription start site region 10111 1936 bp downstream
Tssr10112 transcription start site region 10112 497 bp downstream
Tssr10113 transcription start site region 10113 1510 bp upstream
Tssr10114 transcription start site region 10114 1559 bp upstream
Tssr10115 transcription start site region 10115 1618 bp upstream
Tssr10116 transcription start site region 10116 1640 bp upstream
Tssr10117 transcription start site region 10117 1653 bp upstream
Tssr10118 transcription start site region 10118 1672 bp upstream
Tssr10119 transcription start site region 10119 1688 bp upstream
Tssr10120 transcription start site region 10120 1709 bp upstream
Tssr10121 transcription start site region 10121 1750 bp upstream
Tssr15122 transcription start site region 15122 820 bp upstream
Tssr15123 transcription start site region 15123 805 bp upstream
Tssr15124 transcription start site region 15124 794 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory