GCAACATTAG CAAAGCTTTA TGTTCTCTGT GTTTTCTTCT TGTTGCCCTT CCACTTGCCA CTCATTATGC CACCTTTTGC TTTCTGGGGG TTCCTTAGGG Y TGTCCTGGTA TCCTACTATC CCTGTGGTCC TAACATAGCA TCTGATGTAT AGTCCTAACA TAGATAGCAT AGTATTAAGT TAGCAGTTAA CAAGTGCTAA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49748419 | NES13030755 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | C | C | T | C | C | T | C | C |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
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rs31528581 | SNP | C | C | C | C | C | C | C | C | C | T | C | C | T | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49748419 | NES13030755 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr1:171677909 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cd84 | CD84 antigen | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr423404 | regulatory region 423404 | 1292 bp distal | ||||||
Rr423405 | regulatory region 423405 | 478 bp distal | ||||||
Tssr292 | transcription start site region 292 | 686 bp downstream | ||||||
Tssr10111 | transcription start site region 10111 | 1936 bp downstream | ||||||
Tssr10112 | transcription start site region 10112 | 497 bp downstream | ||||||
Tssr10113 | transcription start site region 10113 | 1510 bp upstream | ||||||
Tssr10114 | transcription start site region 10114 | 1559 bp upstream | ||||||
Tssr10115 | transcription start site region 10115 | 1618 bp upstream | ||||||
Tssr10116 | transcription start site region 10116 | 1640 bp upstream | ||||||
Tssr10117 | transcription start site region 10117 | 1653 bp upstream | ||||||
Tssr10118 | transcription start site region 10118 | 1672 bp upstream | ||||||
Tssr10119 | transcription start site region 10119 | 1688 bp upstream | ||||||
Tssr10120 | transcription start site region 10120 | 1709 bp upstream | ||||||
Tssr10121 | transcription start site region 10121 | 1750 bp upstream | ||||||
Tssr15122 | transcription start site region 15122 | 820 bp upstream | ||||||
Tssr15123 | transcription start site region 15123 | 805 bp upstream | ||||||
Tssr15124 | transcription start site region 15124 | 794 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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