rs31528579 SNP Detail

Summary

• ID
  rs31528579
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171678107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGTCCTG GTATCCTACT
  ATCCCTGTGG TCCTAACATA GCATCTGATG TATAGTCCTA ACATAGATAG CATAGTATTA
  AGTTAGCAGT TAACAAGTGC TAACTATTGG TAGTCCCTAA TTTCCCCCAT CCCACCTGTA
  GTGCCCTAAA ACATGTTGAC TTGGCTTGTC CATTCCAACT AAATCACCAG TATGTTCCTC
  S
  TGAGAGCAAA GCTTCCACTG ACTTGAAAGG AAAGAGGTTC ATCTTAGCAG TCCTGGGATC
  CTGCAGCAGC CACTGAGCTG AAGGGCAAAG GCAGATATAA ATGCGAGCAA CACTGGGCTA
  ATAAATCCAT TCATTTTAGG GACTTGCATT CTCAATGGAC CCTCTGTACA GACATTAGGC
  TAACCTGAAC CCATGTATGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49748417	NES13030760	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31528579					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748417	NES13030760	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171678107 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd84	CD84 antigen			Intron
				Noncoding-Transcript-Variant
Rr423404	regulatory region 423404			1490 bp distal
Rr423405	regulatory region 423405			676 bp distal
Tssr292	transcription start site region 292			884 bp downstream
Tssr10112	transcription start site region 10112			695 bp downstream
Tssr10113	transcription start site region 10113			1312 bp upstream
Tssr10114	transcription start site region 10114			1361 bp upstream
Tssr10115	transcription start site region 10115			1420 bp upstream
Tssr10116	transcription start site region 10116			1442 bp upstream
Tssr10117	transcription start site region 10117			1455 bp upstream
Tssr10118	transcription start site region 10118			1474 bp upstream
Tssr10119	transcription start site region 10119			1490 bp upstream
Tssr10120	transcription start site region 10120			1511 bp upstream
Tssr10121	transcription start site region 10121			1552 bp upstream
Tssr15122	transcription start site region 15122			1018 bp upstream
Tssr15123	transcription start site region 15123			1003 bp upstream
Tssr15124	transcription start site region 15124			992 bp upstream