rs31528560 SNP Detail

Summary

• ID
  rs31528560
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116202447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACAGTCT AGGCCAGTCT
  GATGGAGGCA GTTCTCAACT GAGAGTTGCT CTCTCCAGAT AACTCCAGAT TGTATCAGGT
  TGCCAGAACA CTACCCGGCA GACACGTTCT CGAGCTCTTT CCCTGTGAGG CAGAGCGCCC
  TGAAGCTTAT CCCCGCTAAG CTGAAGCTGG TTTGCTTGAG CCAGTTGAAG ACAGTTTGTT
  S
  TTACTGTGTC TTAGCAATAG GGAATGGTGC CATCTTCAGA CCCATATCAC GCATTTACCC
  TTTGTCTTAG TCAGGGTTTC TATTCCTGCA CAAACAGCAT GACCAAGAAG CAAGTTGGGG
  AGGAAAGGGT TTATTCGGCT TACACTTCCA CACTGCTGTT CATCACCAAA GGAAGTCAGG
  ACTGGAACTC AAGCAGGTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061730	NES11712328	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	C	G	G	G	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31528560					SNP	G	G	G	G	C	C	G	G	G	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061730	NES11712328	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116202447 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tssr58357	transcription start site region 58357			772 bp upstream
Tssr58358	transcription start site region 58358			1480 bp upstream
Washc2	WASH complex subunit 2			Intron
				Noncoding-Transcript-Variant