rs31528136 SNP Detail

Summary

• ID
  rs31528136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135392766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGAATATGTG TTAGCAATCT TTTGTTAGCA TTGGTTCCCT TTTTGGAGAG GCTAGCACTG
  AAATTACAGT TTCAGTGGAA TTTAGAGAAG TAATAACTGC AAAAAATTAA ATACACACAC
  ACACACACAC ACAAAGCATT TTACCTGTGT AAGTGCAGTT TAATCATTTC CATTACCTTA
  TGACCTTGCT TGCCAATGTC TCTAAAGCTT TAAAATTAAA ATAAAATTAT AAAGATGGTT
  TTCCATCTCA TAAAATCCCC TTTTTGAATG GAAGACTTCC TCTTTTTGTA TTTTTTAGAG
  R
  GAACAGTAGG TAACTGTTAA TTATTTATAC ATTCTAATAA ACCATGAATG CACCACACAA
  AATACTGTAC TCGGGGAGCA AACACTGTTT GGGGGGCTTC TCTCTTACCA GAAGAACAGT
  GGGCTTTTCA TTGCCTGTTG GATAAGGTTG CCTGTCAAAA CAAGCTAGCG AAACAATTGA
  ATGTGACTTA GCTGTTTATC AGGTGTCATC TCAGTACCAA CAAAGTCCAT GCAAGGGTTG
  GAGGGGTCTC ACAGCACGGA TGAGCTGTTA CCTGCTTTTA GCTAGAACTA GAGAACTTAC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45543513	mCV25339272	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss135928506	ENSMUSSNP5832387	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs31528136					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135392766 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585765	regulatory region 585765	163 bp distal
Rr585766	regulatory region 585766	966 bp proximal
Tssr35822	transcription start site region 35822	880 bp downstream