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rs31527101 SNP Detail
Summary
  • ID
    rs31527101
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr6:116114550 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TATTTACTGT GACATCACAC
    ACATAGAACA TGGTCAAAAT TGTGAAGGCT CCTCCAGCCC GTGTACAGAA ATCTCTAAAG
    TCCTCGGATC AAGGTATGTG AACCAAGTAT GATAACAAAA TAACCAAAGA CAATAACATA
    ACACTGCCAT AACTGCAAAT GCTGATGGTA AGAATGTCAG CACTCATGAA ACTCAGTTAT
    S
    TCAAAACACT TTTGAATGCT CTGTCATTTT CTTCTCTAAA ATAGTAATTC GTTAGTAGCT
    GTTAATTAGT TTATGAAAAG AGTCAAAATT ACATTTATAT TCCCGGCTTT ACATATACAA
    GAAGCTAGCT ATACTCTGAT AAGACAGGAA TTTGGCTTTT CTTTTGTTCA TTATCTTTAA
    AGTGTCACAT TCTTACAGTA                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
NZW/LacJ
ss48061384 NES11716012 PERLEGEN MM_PANEL2 f SNP C C C C C G C C C
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
NZW/LacJ
rs31527101 SNP C C C C C G C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss48061384 NES11716012 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:116114550 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm66805 predicted gene, 66805 within coordinates
Rr399854 regulatory region 399854 1717 bp upstream
Rr637158 regulatory region 637158 1113 bp distal
Rr637159 regulatory region 637159 1444 bp distal
Rr637160 regulatory region 637160 1154 bp distal
Rr637161 regulatory region 637161 1787 bp proximal
Tmcc1 transmembrane and coiled coil domains 1 Intron
Tssr58351 transcription start site region 58351 132 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory