rs31527101 SNP Detail

Summary

• ID
  rs31527101
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116114550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTACTGT GACATCACAC
  ACATAGAACA TGGTCAAAAT TGTGAAGGCT CCTCCAGCCC GTGTACAGAA ATCTCTAAAG
  TCCTCGGATC AAGGTATGTG AACCAAGTAT GATAACAAAA TAACCAAAGA CAATAACATA
  ACACTGCCAT AACTGCAAAT GCTGATGGTA AGAATGTCAG CACTCATGAA ACTCAGTTAT
  S
  TCAAAACACT TTTGAATGCT CTGTCATTTT CTTCTCTAAA ATAGTAATTC GTTAGTAGCT
  GTTAATTAGT TTATGAAAAG AGTCAAAATT ACATTTATAT TCCCGGCTTT ACATATACAA
  GAAGCTAGCT ATACTCTGAT AAGACAGGAA TTTGGCTTTT CTTTTGTTCA TTATCTTTAA
  AGTGTCACAT TCTTACAGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ
ss48061384	NES11716012	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ
rs31527101					SNP	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061384	NES11716012	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116114550 () rs orientation: forward

Symbol	Name	Function Class
Gm66805	predicted gene, 66805	within coordinates
Rr399854	regulatory region 399854	1717 bp upstream
Rr637158	regulatory region 637158	1113 bp distal
Rr637159	regulatory region 637159	1444 bp distal
Rr637160	regulatory region 637160	1154 bp distal
Rr637161	regulatory region 637161	1787 bp proximal
Tmcc1	transmembrane and coiled coil domains 1	Intron
Tssr58351	transcription start site region 58351	132 bp downstream