TATTTACTGT GACATCACAC ACATAGAACA TGGTCAAAAT TGTGAAGGCT CCTCCAGCCC GTGTACAGAA ATCTCTAAAG TCCTCGGATC AAGGTATGTG AACCAAGTAT GATAACAAAA TAACCAAAGA CAATAACATA ACACTGCCAT AACTGCAAAT GCTGATGGTA AGAATGTCAG CACTCATGAA ACTCAGTTAT S TCAAAACACT TTTGAATGCT CTGTCATTTT CTTCTCTAAA ATAGTAATTC GTTAGTAGCT GTTAATTAGT TTATGAAAAG AGTCAAAATT ACATTTATAT TCCCGGCTTT ACATATACAA GAAGCTAGCT ATACTCTGAT AAGACAGGAA TTTGGCTTTT CTTTTGTTCA TTATCTTTAA AGTGTCACAT TCTTACAGTA S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
FVB/NJ |
KK/HlJ |
NZW/LacJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss48061384 | NES11716012 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | G | C | C | C |
SNP Consensus Information | ||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
FVB/NJ |
KK/HlJ |
NZW/LacJ |
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rs31527101 | SNP | C | C | C | C | C | G | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss48061384 | NES11716012 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr6:116114550 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm66805 | predicted gene, 66805 | within coordinates | ||||||
Rr399854 | regulatory region 399854 | 1717 bp upstream | ||||||
Rr637158 | regulatory region 637158 | 1113 bp distal | ||||||
Rr637159 | regulatory region 637159 | 1444 bp distal | ||||||
Rr637160 | regulatory region 637160 | 1154 bp distal | ||||||
Rr637161 | regulatory region 637161 | 1787 bp proximal | ||||||
Tmcc1 | transmembrane and coiled coil domains 1 | Intron | ||||||
Tssr58351 | transcription start site region 58351 | 132 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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