rs31527099 SNP Detail

Summary

• ID
  rs31527099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116114000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACACTGT ACAACTGATC
  TGGTTATTGT TATAAATAAA ATAAAGCCAG TTTACCCCGT CCGACTAAAA GATACTGCGA
  ATAAAAGAAT GTTACTAAGG TAACTAAGGA ACTAAATGAA CTACTACTTA TCTCACACAT
  TAAGTATTAT AGGAATTGAC TACTTAGCAC ACCTTTCTTT GGGCAGAATG GAGAGCTAAT
  Y
  AACCATCTGT CTGCTTCCTA TCTAAAAACT TGGAGAATAT AGTACATTTC AAATGTCAGT
  TAACTTCATG TGAGGTTTCA CTAGTATTTG TACATTGGCT TTTTTGTATT TTAAAGCTGA
  AATGGTTGAC TACAAAGAGA TGCTGCCATC CCTAGGGAAG GCTCTTAGGC ACAGCTATAA
  AGATGAGAGA ATGTATCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ
ss48061382	NES11716010	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ
rs31527099					SNP	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061382	NES11716010	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116114000 () rs orientation: forward

Symbol	Name	Function Class
Gm66805	predicted gene, 66805	381 bp upstream
Rr637158	regulatory region 637158	563 bp distal
Rr637159	regulatory region 637159	894 bp distal
Rr637160	regulatory region 637160	604 bp distal
Tmcc1	transmembrane and coiled coil domains 1	Intron
Tssr58351	transcription start site region 58351	378 bp upstream