rs31523971 SNP Detail

Summary

• ID
  rs31523971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38537217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAGG GACTGTGCAG TGGCTGGACC
  Y
  GAACAGCAGC TCCATTTCTC CTGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45543205	mCV22716812	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss134837188	ENSMUSSNP251749	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320719947	CHEV_3_38381990	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31523971					SNP	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38537217 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	Coding-Synonymous
Cpgi13104	CpG island 13104	1227 bp proximal
Rr397648	regulatory region 397648	1681 bp upstream
Rr575674	regulatory region 575674	1638 bp distal
Rr575675	regulatory region 575675	1157 bp proximal
Rr575676	regulatory region 575676	1766 bp proximal
Tssr33057	transcription start site region 33057	1711 bp downstream
Tssr33058	transcription start site region 33058	1734 bp downstream
Tssr33059	transcription start site region 33059	1763 bp downstream