rs31523507 SNP Detail

Summary

• ID
  rs31523507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101260059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCATAC TTTTTCCCCA
  GCCATTTAGC TTGCTTGTAA TCATGAAAAA AAAAATCAGT GAACAAAAAA ACAAATTGTG
  AGACTTTCAA GACAGCTGCT GGACTCTTTA AGTAGTGGCA GTGTCATTAA CCAGTCAGAT
  AACTTAAGAA AAACAAAAAC AAAAAAAGCA CAACAAACAA ACAAACAAAG CCAGGGGTAG
  Y
  TCTCCTAGAT TAGAAAACAA AAAAAAACAA ACAAACTGAA ATATACCAAT CAAATTGTCA
  TGAGTAATAC AAATGAAATA AAACACATTT TTAGGTAGTT GGGTTCTACA TCAAAGAATG
  CCACTACATT AATGTTAAAT TTATATTTTT AGAAGTATTC TTTCTTATTG GGTCCCTGGA
  GAGACAGTCC CATGGTTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45542302	mCV23815926	ABI	CRAMUS_MOUSE	f	SNP		T	C			T		T
ss46813856	NES10711906	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T		C	T	T		C	C	T	C		C
ss135546679	ENSMUSSNP711734	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss320851915	CHEV_3_101156666	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31523507					SNP	T	T	C	C	T	T	C	T	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813856	NES10711906	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101260059 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	within coordinates
Rr582016	regulatory region 582016	1659 bp distal
Rr582017	regulatory region 582017	1475 bp proximal
Rr582018	regulatory region 582018	1713 bp proximal