rs31523177 SNP Detail

Summary

• ID
  rs31523177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148686539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGAAGC TGGGAACTGG
  TTACATCATG GTACTCTACG GAAAATAAAC ACTAAGTACT AAGTTTATCA ACATTGTGTC
  ATGGTTCAGC CATCTTATGG CAAACTAGTA ACTCTGGGTT ACTATCCTCT AAGGGGGAAA
  AAAAAGCATT AGTCAAGACC AAAGTCCCGC CCCACCAGCC AACTGCCATT TTGACAGTAG
  Y
  TGGGGTTAGA TTGTTCTGCC GTCCAATGCT GGAGTACAGT CAGACGTATA GACCGGCACA
  GCAGTGTCAC GGAGAGTGGC AACAGTGGGC AGTGTGGCTG CTTTATGGTC CAAAGGCTGA
  AAAGTCCTTG AAAGCAGAAC AGAGCTGAAC TCGCCAAATC ATTTCCAAAG AGATGCATCA
  AGCAACCAAA CAGAGTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
ss45542499	mCV22571478	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss136065931	ENSMUSSNP6489378	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321017018	CHEV_3_148643867	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
rs31523177					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148686539 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587237	regulatory region 587237	1984 bp distal
Rr587239	regulatory region 587239	935 bp proximal